SNP Profiles of TSHA 644 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
1._GC-08-175-4-18	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
2._GC-08-174-4-17	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
3._GC-08-174-4-17	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
4._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
5._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
6._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
7._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
8._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
9._GC-04-034-2-16	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
10._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
11._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
12._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
13._TSA_644	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	CT	GG
14._GC-08-174-4-17	CG	AT	AC	GG	TT	AC	CC	AG	TT	AA	AG	AC	TT	GG
15._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AC	CT	CG
16._GC-08-174-4-17	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AC	CT	CG
17._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AC	CT	CG
18._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AC	CT	CG
19._GC-08-175-4-18	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AC	CT	CG
20._GC-08-174-4-17	CC	AA	CC	GT	TT	CC	CC	AG	CC	AT	AG	AC	CT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CT	AG	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
1._GC-08-175-4-18	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
2._GC-08-174-4-17	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
3._GC-08-174-4-17	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
4._TSA_644	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
5._GC-04-034-2-16	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
6._GC-04-034-2-16	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
7._GC-04-034-2-16	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
8._GC-04-034-2-16	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
9._GC-04-034-2-16	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
10._TSA_644	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
11._TSA_644	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
12._TSA_644	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
13._TSA_644	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
14._GC-08-174-4-17	AC	CT	AA	GG	CC	CT	CC	CG	CT	AG	AA	CT	GT	TT
15._GC-08-175-4-18	_	TT	AA	GT	CG	CT	CT	CG	CT	AG	_	TT	GT	CT
16._GC-08-174-4-17	AC	TT	AA	GT	CG	CT	CT	CG	CT	AG	TT	TT	GT	CT
17._GC-08-175-4-18	AC	TT	AA	GT	CG	CT	CT	CG	CT	AG	TT	TT	GT	CT
18._GC-08-175-4-18	AC	TT	AA	GT	CG	CT	CT	CG	CT	AG	TT	TT	GT	CT
19._GC-08-175-4-18	AC	TT	AA	GT	CG	CT	CT	CG	CT	AG	TT	TT	GT	CT
20._GC-08-174-4-17	AC	TT	AA	GT	CG	CT	CT	CG	CT	AG	TT	TT	GT	CT

	29	30	31	32	33
_Input profile	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-08-175-4-18	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-08-174-4-17	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-08-174-4-17	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._TSA_644	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-04-034-2-16	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-04-034-2-16	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-04-034-2-16	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-04-034-2-16	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-034-2-16	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._TSA_644	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._TSA_644	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._TSA_644	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._TSA_644	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-08-174-4-17	CC	CT	TT	CC	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-08-175-4-18	CC	CC	CC	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-08-174-4-17	CC	CC	CC	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-08-175-4-18	CC	CC	CC	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-08-175-4-18	CC	CC	CC	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-08-175-4-18	CC	CC	CC	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-08-174-4-17	CC	CC	CC	CG	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: TSA_644

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 8, Row 1 13_15

Dapeng Zhang, 2016

1._TSA_644 GC-08-175-4-18

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

2._TSA_644 GC-08-174-4-17

97 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

3._TSA_644 GC-08-174-4-17

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

4._TSA_644

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4216 6

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._TSA_644 GC-04-034-2-16

97 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

6._TSA_644 GC-04-034-2-16

97 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._TSA_644 GC-04-034-2-16

97 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._TSA_644 GC-04-034-2-16

97 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

9._TSA_644 GC-04-034-2-16

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

10._TSA_644

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4216 7 > FP

Dapeng Zhang, 2016

11._TSA_644

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4216 4 > FP

Dapeng Zhang, 2016

12._TSA_644

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4216 3 > FP

Dapeng Zhang, 2016

13._TSA_644

97 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4216 2 > FP

Dapeng Zhang, 2016

14._TSA_644 GC-08-174-4-17

95.5 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._TSA_644 GC-08-175-4-18

67.7 %
31 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

16._TSA_644 GC-08-174-4-17

65.2 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

17._TSA_644 GC-08-175-4-18

65.2 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._TSA_644 GC-08-175-4-18

65.2 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

19._TSA_644 GC-08-175-4-18

65.2 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

20._TSA_644 GC-08-174-4-17

65.2 %
33 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP529	13	TcSNP534	14	TcSNP577	15	TcSNP591
16	TcSNP619	17	TcSNP645	18	TcSNP723	19	TcSNP872	20	TcSNP891
21	TcSNP917	22	TcSNP929	23	TcSNP994	24	TcSNP1062	25	TcSNP1075
26	TcSNP1165	27	TcSNP1253	28	TcSNP1270	29	TcSNP1350	30	TcSNP1414
31	TcSNP1442	32	TcSNP1458	33	TcSNP1484